4JVV Crystal structure of the evolved variant of the computationally designed serine hydrolase, OSH55.4_H1, covalently bound with diisopropyl fluorophosphate (DFP), Northeast Structural Genomics Consortium (NESG) Target OR273 date
authors Kuzin, A., Lew, S., Rajagopalan, S., Seetharaman, J., Tong, S., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.29
ligand MSE, SVY enzyme
Primary referenceDesign of activated serine-containing catalytic triads with atomic-level accuracy., Rajagopalan S, Wang C, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D, Nat Chem Biol. 2014 Apr 6. doi: 10.1038/nchembio.1498. PMID:24705591
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (4jvv.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4JVV
  • CSU: Contacts of Structural Units for 4JVV
  • Structure Factors (48 Kb)
  • Retrieve 4JVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JVV from S2C, [Save to disk]
  • Re-refined 4jvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JVV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JVV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jvv_A] [4jvv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JVV: [A1pp ] by SMART
    • Other resources with information on 4JVV
  • Community annotation for 4JVV at PDBWiki (http://pdbwiki.org)

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