4L4T Structure of human MAIT TCR in complex with human MR1-6-FP date 2013-06-09
authors Patel, O., Kjer-Nielsen, L., Nours, J.Le., Eckle, S.B.G., Birkinshaw, R.W., Beddoe, T., Corbett, A.J., Liu, L., Miles, J.J., Meehan, B., Reantragoon, R., Sandoval-Romero, M.L., Sullivan, L.C., Brooks, A.G., Chen, Z., Fairlie, D.P., McCluskey, J., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 6FP enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, B
  • cellular response to iron io...

  • Primary referenceRecognition of vitamin B metabolites by mucosal-associated invariant T cells., Patel O, Kjer-Nielsen L, Le Nours J, Eckle SB, Birkinshaw R, Beddoe T, Corbett AJ, Liu L, Miles JJ, Meehan B, Reantragoon R, Sandoval-Romero ML, Sullivan LC, Brooks AG, Chen Z, Fairlie DP, McCluskey J, Rossjohn J, Nat Commun. 2013;4:2142. doi: 10.1038/ncomms3142. PMID:23846752
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (4l4t.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (4l4t.pdb2.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 4L4T
  • CSU: Contacts of Structural Units for 4L4T
  • Structure Factors (5604 Kb)
  • Retrieve 4L4T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L4T from S2C, [Save to disk]
  • Re-refined 4l4t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L4T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L4T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4L4T, from MSDmotif at EBI
  • Fold representative 4l4t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l4t_E] [4l4t_H] [4l4t] [4l4t_D] [4l4t_B] [4l4t_A] [4l4t_G] [4l4t_C] [4l4t_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4L4T: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 4L4T
  • Community annotation for 4L4T at PDBWiki (http://pdbwiki.org)

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