4LJ7 ClpB NBD2 K601Q from T. thermophilus in complex with MANT-dADP date
authors Zeymer, C., Barends, T.R.M., Werbeck, N.D., Schlichting, I., Reinstein, J.
compound source
symmetry
R_factor
R_Free 0.29484
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand MNT, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceElements in nucleotide sensing and hydrolysis of the AAA+ disaggregation machine ClpB: a structure-based mechanistic dissection of a molecular motor., Zeymer C, Barends TR, Werbeck ND, Schlichting I, Reinstein J, Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):582-95. doi:, 10.1107/S1399004713030629. Epub 2014 Jan 31. PMID:24531492
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (305 Kb) [Save to disk]
  • Biological Unit Coordinates (4lj7.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (4lj7.pdb2.gz) 101 Kb
  • Biological Unit Coordinates (4lj7.pdb3.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 4LJ7
  • CSU: Contacts of Structural Units for 4LJ7
  • Structure Factors (216 Kb)
  • Retrieve 4LJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LJ7 from S2C, [Save to disk]
  • Re-refined 4lj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LJ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LJ7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lj7_C] [4lj7] [4lj7_B] [4lj7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LJ7: [AAA] [ClpB_D2-small ] by SMART
    • Other resources with information on 4LJ7
  • Community annotation for 4LJ7 at PDBWiki (http://pdbwiki.org)

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