4LY2 X-ray crystal structure of the ruthenium complex [Ru(phen)2(dppz)]2+ bound to d(TCGGTACCGA) date
authors Niyazi, H., Teixeira, S., Mitchell, E., Forsyth, T., Cardin, C.
compound source
symmetry
R_factor
R_Free 0.21860
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand BA, RKP enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (4ly2.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 4LY2
  • CSU: Contacts of Structural Units for 4LY2
  • Structure Factors (54 Kb)
  • Retrieve 4LY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LY2 from S2C, [Save to disk]
  • Re-refined 4ly2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LY2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LY2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ly2] [4ly2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LY2
  • Community annotation for 4LY2 at PDBWiki (http://pdbwiki.org)

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