4N9Z Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E749Q date 2013-10-21
authors Wang, Z., Cheng, Z., Xu, W.
compound source
symmetry
R_factor
R_Free 0.2303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand SO4, V3L enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase., Wang Z, Gagne JP, Poirier GG, Xu W, PLoS One. 2014 Jan 21;9(1):e86010. doi: 10.1371/journal.pone.0086010. eCollection, 2014. PMID:24465839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk]
  • Biological Unit Coordinates (4n9z.pdb1.gz) 176 Kb
  • Biological Unit Coordinates (4n9z.pdb2.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 4N9Z
  • CSU: Contacts of Structural Units for 4N9Z
  • Structure Factors (1420 Kb)
  • Retrieve 4N9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N9Z from S2C, [Save to disk]
  • Re-refined 4n9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4N9Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4N9Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N9Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n9z_B] [4n9z] [4n9z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4N9Z
  • Community annotation for 4N9Z at PDBWiki (http://pdbwiki.org)

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