4UXZ Structure of delta7-DgkA-syn in 7.9 MAG to 2.18 angstrom resolution date
authors Li, D., Howe, N., Caffrey, M.
compound source
symmetry
R_factor
R_Free 0.2348
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.18
ligand 79M, 79N, ACT, FLC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceTernary structure reveals mechanism of a membrane diacylglycerol kinase., Li D, Stansfeld PJ, Sansom MS, Keogh A, Vogeley L, Howe N, Lyons JA, Aragao D, Fromme P, Fromme R, Basu S, Grotjohann I, Kupitz C, Rendek K, Weierstall U, Zatsepin NA, Cherezov V, Liu W, Bandaru S, English NJ, Gati C, Barty A, Yefanov O, Chapman HN, Diederichs K, Messerschmidt M, Boutet S, Williams GJ, Marvin Seibert M, Caffrey M, Nat Commun. 2015 Dec 17;6:10140. doi: 10.1038/ncomms10140. PMID:26673816
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4uxz.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (4uxz.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4UXZ
  • CSU: Contacts of Structural Units for 4UXZ
  • Structure Factors (928 Kb)
  • Retrieve 4UXZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UXZ from S2C, [Save to disk]
  • Re-refined 4uxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UXZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UXZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uxz] [4uxz_D] [4uxz_B] [4uxz_F] [4uxz_E] [4uxz_A] [4uxz_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4UXZ
  • Community annotation for 4UXZ at PDBWiki (http://pdbwiki.org)

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