4X8G Crystal structure of human peptidylarginine deiminase type4 (PAD4) in complex with GSK199 date
authors Lewis, H.D., Bax, B.D., Chung, C.W., Polyakova, O., Thorpe, J.
compound source
R_Free 0.2298
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.29
ligand 3Z0, CA enzyme

Primary referenceInhibition of PAD4 activity is sufficient to disrupt mouse and human NET formation., Lewis HD, Liddle J, Coote JE, Atkinson SJ, Barker MD, Bax BD, Bicker KL, Bingham RP, Campbell M, Chen YH, Chung CW, Craggs PD, Davis RP, Eberhard D, Joberty G, Lind KE, Locke K, Maller C, Martinod K, Patten C, Polyakova O, Rise CE, Rudiger M, Sheppard RJ, Slade DJ, Thomas P, Thorpe J, Yao G, Drewes G, Wagner DD, Thompson PR, Prinjha RK, Wilson DM, Nat Chem Biol. 2015 Jan 26. doi: 10.1038/nchembio.1735. PMID:25622091
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (4x8g.pdb1.gz) 383 Kb
  • LPC: Ligand-Protein Contacts for 4X8G
  • CSU: Contacts of Structural Units for 4X8G
  • Structure Factors (243 Kb)
  • Retrieve 4X8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X8G from S2C, [Save to disk]
  • Re-refined 4x8g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X8G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X8G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x8g] [4x8g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4X8G
  • Community annotation for 4X8G at PDBWiki (http://pdbwiki.org)

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