5A21 Structure of bacteriophage SPP1 head-to-tail interface without DNA and tape measure protein date
authors Chaban, Y., Lurz, R., Brasiles, S., Cornilleau, C., Karreman, M., Zinn-Justin, S., Tavares, P., Orlova, E.V.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.20
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, D, C, E


G


Primary referenceStructural rearrangements in the phage head-to-tail interface during assembly and infection., Chaban Y, Lurz R, Brasiles S, Cornilleau C, Karreman M, Zinn-Justin S, Tavares P, Orlova EV, Proc Natl Acad Sci U S A. 2015 May 19. pii: 201504039. PMID:25991862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (233 Kb) [Save to disk]
  • Biological Unit Coordinates (5a21.pdb1.gz) 227 Kb
  • CSU: Contacts of Structural Units for 5A21
  • Retrieve 5A21 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A21 from S2C, [Save to disk]
  • View 5A21 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A21
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5A21, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a21_A] [5a21] [5a21_G] [5a21_B] [5a21_F] [5a21_D] [5a21_C] [5a21_E] [5a21_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5A21
  • Community annotation for 5A21 at PDBWiki (http://pdbwiki.org)

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