5A2Q
Structure of the HCV IRES bound to the human ribosome
date
authors
Quade, N., Leiundgut, M., Boehringer, D., Heuvel, J.v.d., Ban, N.
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
3.90
ligand
MG
,
ZN
enzyme
Gene
Ontology
Chain
Function
Process
Component
A
virus receptor activity
cytosolic small ribosomal su...
B
cytosolic small ribosomal su...
C
cytosolic small ribosomal su...
D
cytosolic small ribosomal su...
E
ribosome
cytosolic small ribosomal su...
F
cytosolic small ribosomal su...
G
cytosolic small ribosomal su...
H
cytosolic small ribosomal su...
I
cytosolic small ribosomal su...
J
cytosolic small ribosomal su...
K
cytosolic small ribosomal su...
L
cytosolic small ribosomal su...
M
cytosolic small ribosomal su...
N
cytosolic small ribosomal su...
O
translation regulator activi...
cytosolic small ribosomal su...
P
cytosolic small ribosomal su...
Q
cytosolic small ribosomal su...
R
cytosolic small ribosomal su...
S
small ribosomal subunit
cytosolic small ribosomal su...
T
cytosolic small ribosomal su...
U
cytosolic small ribosomal su...
V
cytosolic small ribosomal su...
W
cytosolic small ribosomal su...
X
cytosolic small ribosomal su...
Y
small ribosomal subunit
cytosolic small ribosomal su...
Z
small ribosomal subunit
cytosolic small ribosomal su...
a
b
cytosolic small ribosomal su...
c
d
small ribosomal subunit
cytosolic small ribosomal su...
e
small ribosomal subunit
cytosolic small ribosomal su...
f
g
protein tyrosine kinase inhi...
h
Primary reference
Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-A resolution., Quade N, Boehringer D, Leibundgut M, van den Heuvel J, Ban N, Nat Commun. 2015 Jul 8;6:7646. doi: 10.1038/ncomms8646. PMID:
26155016
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1472 Kb)
[Save to disk]
Biological Unit Coordinates
(5a2q.pdb1.gz) 1454 Kb
LPC:
Ligand-Protein Contacts
for 5A2Q
CSU:
Contacts of Structural Units
for 5A2Q
Retrieve 5A2Q in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5A2Q
from
S2C
,
[Save to disk]
View 5A2Q in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5A2Q
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5a2q_J]
[5a2q_C]
[5a2q]
[5a2q_H]
[5a2q_f]
[5a2q_P]
[5a2q_Y]
[5a2q_K]
[5a2q_G]
[5a2q_Q]
[5a2q_3]
[5a2q_E]
[5a2q_S]
[5a2q_Z]
[5a2q_X]
[5a2q_T]
[5a2q_d]
[5a2q_r]
[5a2q_D]
[5a2q_b]
[5a2q_L]
[5a2q_g]
[5a2q_N]
[5a2q_W]
[5a2q_A]
[5a2q_R]
[5a2q_F]
[5a2q_M]
[5a2q_V]
[5a2q_I]
[5a2q_w]
[5a2q_h]
[5a2q_e]
[5a2q_B]
[5a2q_a]
[5a2q_c]
[5a2q_2]
[5a2q_O]
[5a2q_U]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domains
found in 5A2Q:
[KH]
[Ribosomal_S10]
[Ribosomal_S13_N]
[Ribosomal_S15]
[Ribosomal_S19e]
[Ribosomal_S27]
[Ribosomal_S3Ae]
[Ribosomal_S4]
[Ribosomal_S6e]
[S4]
[WD40 ]
by
SMART
Other resources with information on 5A2Q
Community annotation for
5A2Q
at
PDBWiki
(http://pdbwiki.org)
You may enter another PDB ID code
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