5A31 Cell Cycle date May 26, 2015
title Structure Of The Human Apc-Cdh1-Hsl1-Ubch10 Complex.
authors L.Chang, Z.Zhang, J.Yang, S.H.Mclaughlin, D.Barford
compound source
Molecule: Anaphase-Promoting Complex Subunit 1
Chain: A
Synonym: Apc1, Cyclosome Subunit 1, Mitotic Checkpoint Regu Testis-Specific Gene 24 Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 11
Chain: B
Synonym: Apc11, Cyclosome Subunit 11, Hepatocellular Carcin Iated Ring Finger Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Cell Division Cycle Protein 23 Homolog
Chain: C, P
Synonym: Anaphase-Promoting Complex Subunit 8, Apc8, Cyclos Subunit 8, The Anaphase-Promoting Complex;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 15
Chain: D
Synonym: Apc15
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 16
Chain: E
Synonym: Apc16, Cyclosome Subunit 16
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 3
Chain: F, H
Synonym: Cell Division Cycle Protein 27 Homolog, Apc3, Cdc2 Cdc27hs, H-Nuc;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit Cdc26
Chain: G, W
Synonym: Anaphase-Promoting Complex Subunit 12, Apc12, Cell Cycle Protein 26 Homolog;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 4
Chain: I
Synonym: Apc4, Cyclosome Subunit 4
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 6
Chain: J
Synonym: Cell Division Cycle Protein 16 Homolog, Apc6, Cdc1 Cdc16hs, Cyclosome Subunit 6;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 6
Chain: K
Synonym: Cell Division Cycle Protein 16 Homolog, Apc6, Cdc1 Cdc16hs, Cyclosome Subunit 6;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 10
Chain: L
Synonym: Apc10, Cyclosome Subunit 10
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 13
Chain: M
Synonym: Apc13, Cyclosome Subunit 13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 2
Chain: N
Synonym: Apc2, Cyclosome Subunit 2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 5
Chain: O
Synonym: Apc5, Cyclosome Subunit 5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Fusion Protein - Ubiquitin-Conjugating Enzyme E2 Ubiquitin-Conjugating Enzyme E2 S;
Chain: Q
Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme C Ubiquitin-Conjugating Enzyme C, Ubch10, Ubiquitin Carrier P Ubiquitin-Protein Ligase C, Ubiquitin Carrier Protein S, E2 Ubiquitin-Conjugating Enzyme S, Ubiquitin-Conjugating Enzym Kda, E2-Epf, Ubiquitin-Conjugating Enzyme E2-Epf5, Ubiquiti Ligase S;
Ec: 2.3.2.23, 2.3.2.24, 2.3.2.23
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: The Anaphase-Promoting Complex Chain R
Chain: R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: The Anaphase-Promoting Complex Chain T
Chain: T
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: The Anaphase-Promoting Complex Chain U
Chain: U
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: The Anaphase-Promoting Complex Chain V
Chain: V
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: Anaphase-Promoting Complex Subunit 7
Chain: X, Y
Synonym: Apc7, Cyclosome Subunit 7, The Anaphase-Promoting
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.30 Å
ligand ZN enzyme Transferase E.C.2.3.2.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C, P
  • mitotic metaphase plate cong...

  • D


    E


    F, H


    I


    K, J


    L


    M


    N


    O


    R


    W, G


    Y, X


    Primary referenceAtomic structure of the APC/C and its mechanism of protein ubiquitination., Chang L, Zhang Z, Yang J, McLaughlin SH, Barford D, Nature. 2015 Jun 25;522(7557):450-4. doi: 10.1038/nature14471. Epub 2015 Jun 15. PMID:26083744
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1400 Kb) [Save to disk]
  • Biological Unit Coordinates (5a31.pdb1.gz) 1382 Kb
  • LPC: Ligand-Protein Contacts for 5A31
  • CSU: Contacts of Structural Units for 5A31
  • Retrieve 5A31 in mmCIF format [Save to disk]
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  • Dipole moment, from Dipole Server at Weizmann Institute
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  • Fold representative 5a31 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a31_L] [5a31_K] [5a31_P] [5a31_W] [5a31_A] [5a31_X] [5a31_F] [5a31_G] [5a31] [5a31_V] [5a31_Q] [5a31_Y] [5a31_M] [5a31_J] [5a31_H] [5a31_T] [5a31_O] [5a31_I] [5a31_R] [5a31_N] [5a31_D] [5a31_C] [5a31_B] [5a31_U] [5a31_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A31: [APC10] [APC2] [CULLIN] [RING] [TPR] [UBCc] [WD40 ] by SMART
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