5A37 Actin-Binding Protein date May 27, 2015
title Mutations In The Calponin Homology Domain Of Alpha-Actinin-2 Affect Actin Binding And Incorporation In Muscle.
authors N.J.Haywood, M.Wolny, C.H.Trinh, Y.Shuping, T.A.Edwards, M.Peckha
compound source
Molecule: Human Alpha-Actinin-2
Chain: A, B
Fragment: Calponin Homology Domain
Synonym: Alpha-Actinin Skeletal Muscle Isoform 2, F-Actin Cross-Link Ing Protein, Human Alpha-Actinin-2;
Engineered: Yes
Mutation: Yes
Other_details: Domain Containing Residues 19 To 266. Point G111v At Position 111
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex-6p-1
symmetry Space Group: P 1
R_factor 0.17788 R_Free 0.21586
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.240 46.490 70.380 73.68 80.08 75.53
method X-Ray Diffractionresolution 1.88 Å
Primary referenceHypertrophic Cardiomyopathy Mutations in the calponin-homology domain of ACTN2 affect actin binding and cardiomyocyte Z-disc incorporation., Haywood N, Wolny M, Rogers B, Trinh CH, Shuping Y, Edwards TA, Peckham M, Biochem J. 2016 Jun 10. pii: BCJ20160421. PMID:27287556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5a37.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (5a37.pdb2.gz) 39 Kb
  • CSU: Contacts of Structural Units for 5A37
  • Structure Factors (1830 Kb)
  • Retrieve 5A37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A37 from S2C, [Save to disk]
  • Re-refined 5a37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A37
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5a37 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a37_A] [5a37] [5a37_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A37: [CH ] by SMART
  • Other resources with information on 5A37
  • Community annotation for 5A37 at PDBWiki (http://pdbwiki.org)

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