5A4R Crystal structure of a vitamin B12 trafficking protein date
authors Kopec, J., Fitzpatrick, F., Froese, D.S., Velupillai, S., Nowak, R., Chalk, R., Burgess-Brown, N., Delft, F.von., Arrowsmith, C., Edwards, A., Bountra, C., Fowler, B., Baumgartner, M.R., Yue, W.W.
compound source
symmetry
R_factor
R_Free 0.2554
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the MMACHC-MMADHC protein complex involved in vitamin B12 trafficking., Froese DS, Kopec J, Fitzpatrick F, Schuller M, McCorvie TJ, Chalk R, Plessl T, Fettelschoss V, Fowler B, Baumgartner MR, Yue WW, J Biol Chem. 2015 Oct 19. pii: jbc.M115.683268. PMID:26483544
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (5a4r.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 5A4R
  • Structure Factors (721 Kb)
  • Retrieve 5A4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A4R from S2C, [Save to disk]
  • Re-refined 5a4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A4R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a4r_A] [5a4r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5A4R
  • Community annotation for 5A4R at PDBWiki (http://pdbwiki.org)

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