5A87 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceComparison of Verona Integron-Borne Metallo-beta-Lactamase (VIM) Variants Reveals Differences in Stability and Inhibition Profiles., Makena A, Duzgun AO, Brem J, McDonough MA, Rydzik AM, Abboud MI, Saral A, Cicek AC, Sandalli C, Schofield CJ, Antimicrob Agents Chemother. 2015 Dec 14;60(3):1377-84. doi:, 10.1128/AAC.01768-15. PMID:26666919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (5a87.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (5a87.pdb2.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 5A87
  • CSU: Contacts of Structural Units for 5A87
  • Structure Factors (630 Kb)
  • Retrieve 5A87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A87 from S2C, [Save to disk]
  • Re-refined 5a87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a87_B] [5a87_A] [5a87]
  • SWISS-PROT database:
  • Domain found in 5A87: [Lactamase_B ] by SMART

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