5A9Q Transport Protein date Jul 22, 2015
title Human Nuclear Pore Complex
authors A.Von Appen, J.Kosinski, L.Sparks, A.Ori, A.Diguilio, B.Vollmer, M.Mackmull, N.Banterle, L.Parca, P.Kastritis, K.Buczak, S.Mosala W.Hagen, A.Andres-Pons, E.A.Lemke, P.Bork, W.Antonin, J.S.Glavy, M.Beck
compound source
Molecule: Nucleoporin Nup43
Chain: 0, 9, I, R
Synonym: Nup107-160 Subcomplex Subunit Nup43, P42, Nup43
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup160
Chain: 1, J, S, a
Synonym: 160 Kda Nucleoporin, Nucleoporin Nup160, Nup160
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nucleoporin Nup37
Chain: 2, K, T, b
Synonym: P37, Nup107-160 Subcomplex Subunit Nup37, Nup37
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup133
Chain: 3, C, L, U
Synonym: 133 Kda Nucleoporin, Nucleoporin Nup133, Nup133
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup107
Chain: 4, D, M, V
Synonym: 107 Kda Nucleoporin, Nucleoporin Nup107, Nup107
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup96
Chain: 5, E, N, W
Synonym: 96 Kda Nucleoporin, Nucleoporin Nup96, Nup96
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Protein Sec13 Homolog
Chain: 6, F, O, X
Synonym: Sec13-Like Protein 1, Sec13-Related Protein, Sec13
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nucleoporin Seh1
Chain: 7, G, P, Y
Synonym: Nup107-160 Subcomplex Subunit Seh1, Sec13-Like Pro 1;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup85
Chain: 8, H, Q, Z
Synonym: 85 Kda Nucleoporin, Frount, Nucleoporin Nup75, Nuc Nup85, Pericentrin-1, Nup85;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup155
Chain: A, B
Synonym: 155 Kda Nucleoporin, Nucleoporin Nup155, Nup155
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 23.00 Å
Gene
Ontology
ChainFunctionProcessComponent
7, Y, G, P
  • mitotic metaphase plate cong...
  • intracellular transport of v...

    • B, A
  • intracellular transport of v...

    • D, V, M, 4
  • intracellular transport of v...

    • F, 6, O, X
  • COPII vesicle coating
  • intracellular transport of v...
  • cargo loading into COPII-coa...
  • COPII-coated vesicle budding...

    • I, 0, 9, R
  • intracellular transport of v...

    • N, E, W, 5


    S, a, 1, J
  • intracellular transport of v...

    • T, K, 2, b
  • intracellular transport of v...

    • U, C, L, 3
  • intracellular transport of v...

    • Z, H, Q, 8
  • intracellular transport of v...

    • Primary referenceIn situ structural analysis of the human nuclear pore complex., von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio AL, Vollmer B, Mackmull MT, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M, Nature. 2015 Oct 1;526(7571):140-3. doi: 10.1038/nature15381. Epub 2015 Sep 23. PMID:26416747
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1815 Kb) [Save to disk]
  • Biological Unit Coordinates (5a9q.pdb1.gz) 12932 Kb
  • CSU: Contacts of Structural Units for 5A9Q
  • Retrieve 5A9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A9Q from S2C, [Save to disk]
    • View 5A9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A9Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5a9q from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a9q_8] [5a9q_a] [5a9q_M] [5a9q_G] [5a9q_3] [5a9q_T] [5a9q_F] [5a9q_X] [5a9q_H] [5a9q_I] [5a9q_O] [5a9q_U] [5a9q_6] [5a9q_P] [5a9q_b] [5a9q_Z] [5a9q_Q] [5a9q_2] [5a9q_1] [5a9q_7] [5a9q_R] [5a9q_Y] [5a9q_4] [5a9q] [5a9q_C] [5a9q_5] [5a9q_L] [5a9q_V] [5a9q_A] [5a9q_D] [5a9q_B] [5a9q_9] [5a9q_J] [5a9q_N] [5a9q_S] [5a9q_0] [5a9q_K] [5a9q_E] [5a9q_W]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A9Q: [WD40 ] by SMART
    • Other resources with information on 5A9Q
  • Community annotation for 5A9Q at PDBWiki (http://pdbwiki.org)

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