5ABD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CU, NA, SO4	enzyme
Primary reference	Biophysical Studies of the Induced Dimerization of Human VEGF Receptor 1 Binding Domain by Divalent Metals Competing with VEGF-A., Gaucher JF, Reille-Seroussi M, Gagey-Eilstein N, Broussy S, Coric P, Seijo B, Lascombe MB, Gautier B, Liu WQ, Huguenot F, Inguimbert N, Bouaziz S, Vidal M, Broutin I, PLoS One. 2016 Dec 12;11(12):e0167755. doi: 10.1371/journal.pone.0167755., eCollection 2016. PMID:27942001

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (5abd.pdb1.gz) 50 Kb Biological Unit Coordinates (5abd.pdb2.gz) 49 Kb Biological Unit Coordinates (5abd.pdb3.gz) 52 Kb LPC: Ligand-Protein Contacts for 5ABD CSU: Contacts of Structural Units for 5ABD Structure Factors (450 Kb) Retrieve 5ABD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ABD from S2C, [Save to disk] Re-refined 5abd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ABD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5abd] [5abd_E] [5abd_I] [5abd_X] SWISS-PROT database: Domain found in 5ABD: [IG ] by SMART

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