5ABH Structure of GH84 with ligand date
authors Bergeron-Brlek, M., Goodwin-Tindall, J., Cekic, N., Varghese, V., Zandberg, W.F., Shan, X., Roth, C., Chan, S., Davies, G.J., Vocadlo, D.J., Britton, R.
compound source
symmetry
R_factor
R_Free 0.25221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand CA, CL, EDO, YWN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Convenient Approach to Stereoisomeric Iminocyclitols: Generation of Potent Brain-Permeable OGA Inhibitors., Bergeron-Brlek M, Goodwin-Tindall J, Cekic N, Roth C, Zandberg WF, Shan X, Varghese V, Chan S, Davies GJ, Vocadlo DJ, Britton R, Angew Chem Int Ed Engl. 2015 Nov 6. doi: 10.1002/anie.201507985. PMID:26545827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (478 Kb) [Save to disk]
  • Biological Unit Coordinates (5abh.pdb1.gz) 240 Kb
  • Biological Unit Coordinates (5abh.pdb2.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 5ABH
  • CSU: Contacts of Structural Units for 5ABH
  • Structure Factors (8511 Kb)
  • Retrieve 5ABH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ABH from S2C, [Save to disk]
  • Re-refined 5abh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ABH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ABH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5abh] [5abh_B] [5abh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ABH
  • Community annotation for 5ABH at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science