5ADO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DEP enzyme
Primary referenceRobotic QM/MM-driven maturation of antibody combining sites., Smirnov IV, Golovin AV, Chatziefthimiou SD, Stepanova AV, Peng Y, Zolotareva OI, Belogurov AA Jr, Kurkova IN, Ponomarenko NA, Wilmanns M, Blackburn GM, Gabibov AG, Lerner RA, Sci Adv. 2016 Oct 19;2(10):e1501695. eCollection 2016 Oct. PMID:27774510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (5ado.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 5ADO
  • CSU: Contacts of Structural Units for 5ADO
  • Structure Factors (1095 Kb)
  • Retrieve 5ADO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ADO from S2C, [Save to disk]
  • Re-refined 5ado structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ADO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ado] [5ado_H] [5ado_L]
  • SWISS-PROT database:
  • Domains found in 5ADO: [IG_like] [IGv ] by SMART

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