5ADY Cryo-EM structures of the 50S ribosome subunit bound with HflX date
authors Zhang, Y., Mandava, C.S., Cao, W., Li, X., Zhang, D., Li, N., Zhang, Y., Zhang, X., Qin, Y., Mi, K., Lei, J., Sanyal, S., Gao, N.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.50
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
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    Primary referenceHflX is a ribosome-splitting factor rescuing stalled ribosomes under stress conditions., Zhang Y, Mandava CS, Cao W, Li X, Zhang D, Li N, Zhang Y, Zhang X, Qin Y, Mi K, Lei J, Sanyal S, Gao N, Nat Struct Mol Biol. 2015 Oct 12. doi: 10.1038/nsmb.3103. PMID:26458047
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1650 Kb) [Save to disk]
  • Biological Unit Coordinates (5ady.pdb1.gz) 1641 Kb
  • LPC: Ligand-Protein Contacts for 5ADY
  • CSU: Contacts of Structural Units for 5ADY
  • Retrieve 5ADY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ADY from S2C, [Save to disk]
    • View 5ADY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ADY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ady] [5ady_D] [5ady_Z] [5ady_1] [5ady_2] [5ady_S] [5ady_6] [5ady_F] [5ady_3] [5ady_Q] [5ady_C] [5ady_5] [5ady_P] [5ady_R] [5ady_U] [5ady_L] [5ady_A] [5ady_B] [5ady_H] [5ady_7] [5ady_G] [5ady_O] [5ady_Y] [5ady_J] [5ady_K] [5ady_N] [5ady_4] [5ady_I] [5ady_0] [5ady_E] [5ady_W] [5ady_M] [5ady_V] [5ady_T] [5ady_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5ADY: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 5ADY
  • Community annotation for 5ADY at PDBWiki (http://pdbwiki.org)

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