5AFO	Long Polar Fimbriae adhesin LpfD from the adherent invasive E. coli strain LF82	date
authors	Coppens, F., Iyyathurai, J., Remaut, H.
compound		source
symmetry		R_factor R_Free 0.19600
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.82
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and adhesive properties of the long polar fimbriae protein LpfD from adherent-invasive Escherichia coli., Coppens F, Iyyathurai J, Ruer S, Fioravanti A, Taganna J, Vereecke L, De Greve H, Remaut H, Acta Crystallogr D Biol Crystallogr. 2015 Aug 1;71(Pt 8):1615-26. doi:, 10.1107/S1399004715009803. Epub 2015 Jul 28. PMID:26249343

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk] Biological Unit Coordinates (5afo.pdb1.gz) 120 Kb Biological Unit Coordinates (5afo.pdb2.gz) 119 Kb LPC: Ligand-Protein Contacts for 5AFO CSU: Contacts of Structural Units for 5AFO Structure Factors (1557 Kb) Retrieve 5AFO in mmCIF format [Save to disk] Re-refined 5afo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AFO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AFO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5afo] [5afo_B] [5afo_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5AFO

Community annotation for 5AFO at PDBWiki (http://pdbwiki.org)

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