5AIM Transcription date Feb 16, 2015
title Crystal Structure Of T138 Central Ewh Domain
authors G.Male, S.Glatt, C.W.Mueller
compound source
Molecule: Transcription Factor Tau 138 Kda Subunit
Chain: A, B
Fragment: Central Ewh Domain, Residues 546-641
Synonym: Tfiiic 138 Kda Subunit, Transcription Factor C Sub
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3 2
R_factor 0.175 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.090 129.090 68.040 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL enzyme
Primary referenceArchitecture of TFIIIC and its role in RNA polymerase III pre-initiation complex assembly., Male G, von Appen A, Glatt S, Taylor NM, Cristovao M, Groetsch H, Beck M, Muller CW, Nat Commun. 2015 Jun 10;6:7387. doi: 10.1038/ncomms8387. PMID:26060179
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (5aim.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (5aim.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5AIM
  • CSU: Contacts of Structural Units for 5AIM
  • Structure Factors (394 Kb)
  • Retrieve 5AIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AIM from S2C, [Save to disk]
  • Re-refined 5aim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AIM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5aim from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aim_B] [5aim_A] [5aim]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AIM
  • Community annotation for 5AIM at PDBWiki (http://pdbwiki.org)

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