| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (87 Kb) [Save to disk]
 - LPC: Ligand-Protein Contacts for 5AIY
- CSU: Contacts of Structural Units for 5AIY
- Retrieve 5AIY in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 5AIY
from S2C,
[Save to disk]
|
| View 5AIY in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
- On AstexViewer, from
MSD-EBI
(viewer documentation).
- On RasMol
(Install RasMol freeware)
Here's help on
how to use RasMol.
|
| Visual 3D analysis of 5AIY |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
|
| Structure-derived information |
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 5AIY,
from MSDmotif at EBI
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d5aiy.1, region B:,A
[Jmol]
[rasmolscript]
[script source]
- Domain d5aiy.2, region D:,C
[Jmol]
[rasmolscript]
[script source]
- Domain d5aiy.3, region F:,E
[Jmol]
[rasmolscript]
[script source]
- Domain d5aiy.4, region H:,G
[Jmol]
[rasmolscript]
[script source]
- Domain d5aiy.5, region J:,I
[Jmol]
[rasmolscript]
[script source]
- Domain d5aiy.6, region L:,K
[Jmol]
[rasmolscript]
[script source]
- Fold representative 5aiy from FSSP and Dali (Families of Structurally Similar Proteins)
|
| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [5aiy_A] [5aiy_B] [5aiy_C] [5aiy_D] [5aiy_E] [5aiy_F] [5aiy_G] [5aiy_H] [5aiy_I] [5aiy_J] [5aiy_K] [5aiy_L]
- SWISS-PROT database: [P01308]
- Domain organization of [INS_HUMAN] by SWISSPFAM
- Domain found in 5AIY: [IlGF
] by SMART
- Alignments of the sequence of 5AIY with the sequences
similar proteins can be viewed for 5AIY's classification [INS_HUMAN] at ProtoMap.
Click on "Neighbors List", then on the "See Alignments" button below the list.
- A sequence distance tree ("phylogenetic tree")
can be viewed for 1ACL's classification [INS_HUMAN] at ProtoMap. Click on the Cluster number.
|
|
Other resources with information on 5AIY |
- Community annotation for 5AIY at PDBWiki (http://pdbwiki.org)
- MMDB (Entrez's Structure Database)
|
| Movements, Movies and Images |
- Domain movements in
5AIY from the Database of
Macromolecular Movements.
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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