5AIZ Zinc-Binding Protein date Feb 18, 2015
title The Pias-Like Coactivator Zmiz1 Is A Direct And Selective Co Of Notch1 In T-Cell Development And Leukemia
authors H.J.Cho, M.Murai, M.Chiang, T.Cierpicki
compound source
Molecule: Zinc Finger Miz Domain-Containing Protein 1
Chain: A
Fragment: Tpr Domain, Unp Residues 1-118
Synonym: Pias-Like Protein Zimp10, Retinoic Acid-Induced Pr 17, Zmiz1 N-Terminal Domain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet32a
symmetry Space Group: P 21 21 21
R_factor 0.15839 R_Free 0.20441
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.472 45.040 57.518 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ACT, EDO, MSE, UNX enzyme
Primary referenceThe PIAS-like Coactivator Zmiz1 Is a Direct and Selective Cofactor of Notch1 in T Cell Development and Leukemia., Pinnell N, Yan R, Cho HJ, Keeley T, Murai MJ, Liu Y, Alarcon AS, Qin J, Wang Q, Kuick R, Elenitoba-Johnson KS, Maillard I, Samuelson LC, Cierpicki T, Chiang MY, Immunity. 2015 Nov 17;43(5):870-83. doi: 10.1016/j.immuni.2015.10.007. Epub 2015 , Oct 27. PMID:26522984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (5aiz.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 5AIZ
  • CSU: Contacts of Structural Units for 5AIZ
  • Structure Factors (235 Kb)
  • Retrieve 5AIZ in mmCIF format [Save to disk]
  • Re-refined 5aiz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AIZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5aiz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aiz] [5aiz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AIZ
  • Community annotation for 5AIZ at PDBWiki (http://pdbwiki.org)

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