5AJ1 Structural Protein date Feb 19, 2015
title Solution Structure Of The Smarc Domain
authors M.D.Allen, S.M.V.Freund, G.Zinzalla, M.Bycroft
compound source
Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily B Member 1;
Chain: A
Synonym: Brg1-Associated Factor 47, Baf47, Integrase Intera Protein, Snf5 Homolog, Hsnf5, Smarc B1 Domain;
Engineered: Yes
Other_details: Ggs At The N-Terminus Results From A Tev Cle Site.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
Expression_system_vector_type: Plasmid
Expression_system_vector: Modified Prseta
methodSolution NMR
Primary referenceThe SWI/SNF Subunit INI1 Contains an N-Terminal Winged Helix DNA Binding Domain that Is a Target for Mutations in Schwannomatosis., Allen MD, Freund SM, Zinzalla G, Bycroft M, Structure. 2015 Jul 7;23(7):1344-9. doi: 10.1016/j.str.2015.04.021. Epub 2015 Jun, 11. PMID:26073604
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (612 Kb) [Save to disk]
  • Biological Unit Coordinates (5aj1.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 5AJ1
  • Original NMR restraints for 5AJ1 from PDB
  • Retrieve 5AJ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AJ1 from S2C, [Save to disk]
  • View 5AJ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AJ1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n5aj1, region J:182-274 [Jmol] [rasmolscript] [script source]
  • Fold representative 5aj1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aj1_A] [5aj1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AJ1
  • Community annotation for 5AJ1 at PDBWiki (http://pdbwiki.org)

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