5AQ0 Hydrolase date Sep 18, 2015
title The Structure Of The Transthyretin-Like Domain Of The First Catalytic Domain Of The Human Carboxypeptidase D
authors P.Gallego, J.Garcia-Pardo, J.Lorenzo, F.X.Aviles, S.Ventura, D.R
compound source
Molecule: Carboxypeptidase D
Chain: A, B
Fragment: Transthyretin-Like Domain, Unp 383-461
Synonym: Metallocarboxypeptidase D, Gp180, Metallocarboxype D , Gp180, Human Carboxypeptidase D, Human Carboxypeptidas
Ec: 3.4.17.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.15282 R_Free 0.17514
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.773 46.051 42.730 90.00 90.18 90.00
method X-Ray Diffractionresolution 0.95 Å
ligand GOL enzyme Hydrolase E.C.3.4.17.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5aq0.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5AQ0
  • CSU: Contacts of Structural Units for 5AQ0
  • Structure Factors (1566 Kb)
  • Retrieve 5AQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AQ0 from S2C, [Save to disk]
  • Re-refined 5aq0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AQ0 in 3D
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  • Visual 3D analysis of 5AQ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5aq0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aq0] [5aq0_B] [5aq0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5AQ0
  • Community annotation for 5AQ0 at PDBWiki (http://pdbwiki.org)

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