5AR2 Transferase date Sep 23, 2015
title Rip2 Kinase Catalytic Domain (1 - 310)
authors A.K.Charnley, M.A.Convery, A.Lakdawala Shah, E.Jones, P.Hardwick A.Bridges, B.J.Votta, P.J.Gough, R.W.Marquis, J.Bertin, L.Casill
compound source
Molecule: Receptor-Interacting Serinethreonine-Protein Kin
Chain: A, B
Fragment: Kinase Domain, Unp Residues 1-310
Synonym: Card-Containing Interleukin-1 Beta-Converting Enzy Associated Kinase, Card-Containing Il-1 Beta Ice-Kinase, R Interacting Clarp Kinase, Receptor-Interacting Protein 2, Tyrosine-Protein Kinase Ripk2, Receptor-Interacting Serine Threonine- Protein Kinase 2;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.16983 R_Free 0.21125
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.566 132.566 107.788 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.44 Å
ligand CA enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of human RIP2 kinase catalytic domain complexed with ATP-competitive inhibitors: Foundations for understanding inhibitor selectivity., Charnley AK, Convery MA, Lakdawala Shah A, Jones E, Hardwicke P, Bridges A, Ouellette M, Totoritis R, Schwartz B, King BW, Wisnoski DD, Kang J, Eidam PM, Votta BJ, Gough PJ, Marquis RW, Bertin J, Casillas L, Bioorg Med Chem. 2015 Sep 25. pii: S0968-0896(15)30063-8. doi:, 10.1016/j.bmc.2015.09.038. PMID:26455654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (5ar2.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 5AR2
  • CSU: Contacts of Structural Units for 5AR2
  • Structure Factors (753 Kb)
  • Retrieve 5AR2 in mmCIF format [Save to disk]
  • Re-refined 5ar2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AR2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ar2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ar2] [5ar2_A] [5ar2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AR2: [STYKc ] by SMART
  • Other resources with information on 5AR2
  • Community annotation for 5AR2 at PDBWiki (http://pdbwiki.org)

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