5AR4 Transferase date Sep 24, 2015
title Rip2 Kinase Catalytic Domain (1 - 310) Complex With Sb-20358
authors A.K.Charnley, M.A.Convery, A.Lakdawala Shah, E.Jones, P.Hardwick A.Bridges, B.J.Votta, P.J.Gough, R.W.Marquis, J.Bertin, L.Casill
compound source
Molecule: Receptor-Interacting Serinethreonine-Protein Kin
Chain: A, B
Fragment: Kinase Domain, Unp Residues 1-310
Synonym: Card-Containing Interleukin-1 Beta-Converting Enzy Associated Kinase, Card-Containing Il-1 Beta Ice-Kinase, R Interacting Clarp Kinase, Receptor-Interacting Protein 2, Tyrosine-Protein Kinase Ripk2;
Ec: 2.7.10.2, 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.1778 R_Free 0.2162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.217 131.217 106.904 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand SB2 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of human RIP2 kinase catalytic domain complexed with ATP-competitive inhibitors: Foundations for understanding inhibitor selectivity., Charnley AK, Convery MA, Lakdawala Shah A, Jones E, Hardwicke P, Bridges A, Ouellette M, Totoritis R, Schwartz B, King BW, Wisnoski DD, Kang J, Eidam PM, Votta BJ, Gough PJ, Marquis RW, Bertin J, Casillas L, Bioorg Med Chem. 2015 Sep 25. pii: S0968-0896(15)30063-8. doi:, 10.1016/j.bmc.2015.09.038. PMID:26455654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5ar4.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 5AR4
  • CSU: Contacts of Structural Units for 5AR4
  • Structure Factors (1666 Kb)
  • Retrieve 5AR4 in mmCIF format [Save to disk]
  • Re-refined 5ar4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5AR4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5AR4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ar4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ar4_B] [5ar4] [5ar4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AR4: [STYKc ] by SMART
  • Other resources with information on 5AR4
  • Community annotation for 5AR4 at PDBWiki (http://pdbwiki.org)

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