5AVZ Hydrolase Transport Protein date Jul 01, 2015
title Kinetics By X-Ray Crystallography: Tl+-Substitution Of Bound E2.Mgf42-.2k+ Crystal After 55 Min
authors H.Ogawa, F.Cornelius, A.Hirata, C.Toyoshima
compound source
Molecule: Na, K-Atpase Alpha Subunit
Chain: A
 Organism_scientific: Squalus Acanthias
Organism_common: Spiny Dogfish
Organism_taxid: 7797

Molecule: Na+,K+-Atpase Beta Subunit
Chain: B
Synonym: Sodiumpotassium-Transporting Atpase Subunit Beta-
Organism_scientific: Squalus Acanthias
Organism_common: Spiny Dogfish
Organism_taxid: 7797

Molecule: Phospholemman-Like Protein
Chain: G
Organism_scientific: Squalus Acanthias
Organism_common: Spiny Dogfish
Organism_taxid: 7797
symmetry Space Group: C 1 2 1
R_factor 0.297 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
222.704 50.914 164.695 90.00 104.52 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand CLR, K, MF4, MG, NAG, TL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • potassium-transporting ATPas...


    • B


    G


    Primary referenceSequential substitution of K(+) bound to Na(+),K(+)-ATPase visualized by X-ray crystallography., Ogawa H, Cornelius F, Hirata A, Toyoshima C, Nat Commun. 2015 Aug 10;6:8004. doi: 10.1038/ncomms9004. PMID:26258479
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (5avz.pdb1.gz) 202 Kb
  • LPC: Ligand-Protein Contacts for 5AVZ
  • CSU: Contacts of Structural Units for 5AVZ
  • Structure Factors (725 Kb)
  • Retrieve 5AVZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AVZ from S2C, [Save to disk]
  • Re-refined 5avz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AVZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AVZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5avz] [5avz_A] [5avz_G] [5avz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AVZ: [Cation_ATPase_N ] by SMART
    • Other resources with information on 5AVZ
  • Community annotation for 5AVZ at PDBWiki (http://pdbwiki.org)

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