5AY8	Dna Binding Protein Dna	date	Aug 10, 2015
title	Crystal Structure Of Human Nucleosome Containing H3.Y
authors	T.Kujirai, N.Horikoshi, K.Sato, K.Maehara, S.Machida, A.Osakabe, H Y.Ohkawa, H.Kurumizaka
compound		source
Molecule: H3.Y Chain: A, E Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2a Type 1-Be Chain: C, G Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.522 101.922 175.736 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	CL, MN	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk] Biological Unit Coordinates (5ay8.pdb1.gz) 234 Kb LPC: Ligand-Protein Contacts for 5AY8 CSU: Contacts of Structural Units for 5AY8 Structure Factors (721 Kb) Retrieve 5AY8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AY8 from S2C, [Save to disk] Re-refined 5ay8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AY8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AY8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ay8_I] [5ay8_E] [5ay8_A] [5ay8_H] [5ay8_F] [5ay8] [5ay8_D] [5ay8_B] [5ay8_J] [5ay8_C] [5ay8_G] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5AY8: [H2A] [H2B] [H3] [H4 ] by SMART

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Community annotation for 5AY8 at PDBWiki (http://pdbwiki.org)

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