5B0H Metal Binding Protein date Oct 29, 2015
title Crystal Structure Of Human Leukocyte Cell-Derived Chemotaxin
authors H.Zheng, T.Miyakawa, Y.Sawano, M.Tanokura
compound source
Molecule: Leukocyte Cell-Derived Chemotaxin-2
Chain: A, B
Fragment: Unp Residues 19-151
Synonym: Hlect2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lect2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Gami 2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet48b
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.415 63.514 63.976 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5b0h.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5B0H
  • CSU: Contacts of Structural Units for 5B0H
  • Structure Factors (506 Kb)
  • Retrieve 5B0H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B0H from S2C, [Save to disk]
  • Re-refined 5b0h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5B0H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5B0H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b0h] [5b0h_B] [5b0h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5B0H
  • Community annotation for 5B0H at PDBWiki (http://pdbwiki.org)

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