5B39 Immune System date Feb 12, 2016
title Kir3dl1015 In Complex With Hla-B57:01
authors J.P.Vivian, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-57 Alph
Chain: A
Fragment: Unp Residues 25-300
Synonym: Hla-B57:01,Bw-57,Mhc Class I Antigen B57
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588

Molecule: Peptide From Ig Kappa Chain C Region
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Killer Cell Immunoglobulin-Like Receptor 3dl1
Chain: G
Fragment: Unp Residues 22-320
Synonym: Kir3dl1015,Cd158 Antigen-Like Family Member E,Hla Specific Inhibitory Nk Cell Receptor,Mhc Class I Nk Cell Re Natural Killer-Associated Transcript 3,Nkat-3,P70 Natural K Receptor Clones Cl-2cl-11,P70 Nk Receptor Cl-2cl-11;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kir3dl1, Cd158e, Nkat3, Nkb1
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor 0.178 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.568 61.118 65.089 95.56 98.50 108.65
method X-Ray Diffractionresolution 2.50 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceKiller cell immunoglobulin-like receptor 3DL1 polymorphism defines distinct hierarchies of HLA class I recognition., Saunders PM, Pymm P, Pietra G, Hughes VA, Hitchen C, O'Connor GM, Loiacono F, Widjaja J, Price DA, Falco M, Mingari MC, Moretta L, McVicar DW, Rossjohn J, Brooks AG, Vivian JP, J Exp Med. 2016 May 2;213(5):791-807. doi: 10.1084/jem.20152023. Epub 2016 Apr 4. PMID:27045007
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (5b39.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 5B39
  • CSU: Contacts of Structural Units for 5B39
  • Structure Factors (514 Kb)
  • Retrieve 5B39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B39 from S2C, [Save to disk]
  • Re-refined 5b39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B39 in 3D
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  • Visual 3D analysis of 5B39
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b39_G] [5b39] [5b39_B] [5b39_C] [5b39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5B39: [IG] [IGc1 ] by SMART
  • Other resources with information on 5B39
  • Community annotation for 5B39 at PDBWiki (http://pdbwiki.org)

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