5B3J	Transport Protein	date	Mar 01, 2016
title	Activation Of Nmda Receptors And The Mechanism Of Inhibition Ifenprodil
authors	N.Tajima, E.Karakas, T.Grant, N.Simorowski, R.Diaz-Avalos, N.Grig H.Furukawa
compound		source
Molecule: Nmda Glutamate Receptor Subunit Chain: A, B Fragment: Unp Residues 23-405 Engineered: Yes Mutation: Yes		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Gene: Grin1, Nr1 Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
Molecule: Glutamate Receptor Ionotropic, Nmda 2b Chain: C, D Fragment: Unp Residues 31-394 Synonym: Glun2b,Glutamate [Nmda] Receptor Subunit Epsilon-2 D-Aspartate Receptor Subtype 2b,Nr2b; Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Grin2b Expression_system: Trichoplusia Ni Expression_system_taxid: 7111
Molecule: Fab, Heavy Chain Chain: E, H		Organism_scientific: Mus Musculus Organism_taxid: 10090
Molecule: Fab, Light Chain Chain: F, L		Organism_scientific: Mus Musculus Organism_taxid: 10090
symmetry	Space Group: C 1 2 1	R_factor 0.273 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 247.249 79.903 181.314 90.00 127.09 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	NA	enzyme
Primary reference	Activation of NMDA receptors and the mechanism of inhibition by ifenprodil., Tajima N, Karakas E, Grant T, Simorowski N, Diaz-Avalos R, Grigorieff N, Furukawa H, Nature. 2016 May 2. doi: 10.1038/nature17679. PMID:27135925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk] Biological Unit Coordinates (5b3j.pdb1.gz) 102 Kb Biological Unit Coordinates (5b3j.pdb2.gz) 97 Kb Biological Unit Coordinates (5b3j.pdb3.gz) 67 Kb Biological Unit Coordinates (5b3j.pdb4.gz) 68 Kb LPC: Ligand-Protein Contacts for 5B3J CSU: Contacts of Structural Units for 5B3J Structure Factors (1007 Kb) Retrieve 5B3J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B3J from S2C, [Save to disk] Re-refined 5b3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5B3J

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b3j_E] [5b3j_C] [5b3j_H] [5b3j] [5b3j_L] [5b3j_D] [5b3j_B] [5b3j_F] [5b3j_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5B3J: [IG_like] [IGv ] by SMART

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