5B4N Ligase date Apr 06, 2016
title Structure Analysis Of Function Associated Loop Mutant Of Sub Recognition Domain Of Fbs1 Ubiquitin Ligase
authors K.Nishio, Y.Yoshida, K.Tanaka, T.Mizushima
compound source
Molecule: F-Box Only Protein 2
Chain: A, B
Fragment: Unp Residues 117-297
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Fbxo2, Fbs1, Fbx2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.541 96.203 44.681 90.00 101.90 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceStructural analysis of a function-associated loop mutant of the substrate-recognition domain of Fbs1 ubiquitin ligase., Nishio K, Yoshida Y, Tanaka K, Mizushima T, Acta Crystallogr F Struct Biol Commun. 2016 Aug;72(Pt 8):619-26. doi:, 10.1107/S2053230X16011018. Epub 2016 Jul 27. PMID:27487926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (5b4n.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 5B4N
  • Structure Factors (353 Kb)
  • Retrieve 5B4N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B4N from S2C, [Save to disk]
  • Re-refined 5b4n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B4N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B4N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5b4n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b4n_B] [5b4n] [5b4n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5B4N: [FBA ] by SMART
  • Other resources with information on 5B4N
  • Community annotation for 5B4N at PDBWiki (http://pdbwiki.org)

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