OCA Atlas for 5B4W

5B4W

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACE, DTR, NAG, NH2

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, E, D, A, C, F

Primary reference

Allosteric Inhibition of a Semaphorin 4D Receptor Plexin B1 by a High-Affinity Macrocyclic Peptide., Matsunaga Y, Bashiruddin NK, Kitago Y, Takagi J, Suga H, Cell Chem Biol. 2016 Nov 17;23(11):1341-1350. doi:, 10.1016/j.chembiol.2016.09.015. Epub 2016 Oct 27. PMID:27984026

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (884 Kb) [Save to disk]

Biological Unit Coordinates (5b4w.pdb1.gz) 147 Kb

Biological Unit Coordinates (5b4w.pdb2.gz) 147 Kb

Biological Unit Coordinates (5b4w.pdb3.gz) 150 Kb

Biological Unit Coordinates (5b4w.pdb4.gz) 149 Kb

Biological Unit Coordinates (5b4w.pdb5.gz) 163 Kb

Biological Unit Coordinates (5b4w.pdb6.gz) 150 Kb

LPC: Ligand-Protein Contacts for 5B4W

CSU: Contacts of Structural Units for 5B4W

Structure Factors (2048 Kb)

Retrieve 5B4W in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5B4W from S2C, [Save to disk]

Re-refined 5b4w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B4W in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b4w] [5b4w_A] [5b4w_B] [5b4w_C] [5b4w_D] [5b4w_E] [5b4w_F] [5b4w_G] [5b4w_H] [5b4w_I] [5b4w_J] [5b4w_K] [5b4w_L]

SWISS-PROT database:

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