5B5O date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, EDO, NA, WMM, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceDiscovery of Novel, Highly Potent, and Selective Matrix Metalloproteinase (MMP)-13 Inhibitors with a 1,2,4-Triazol-3-yl Moiety as a Zinc Binding Group Using a Structure-Based Design Approach., Nara H, Kaieda A, Sato K, Naito T, Mototani H, Oki H, Yamamoto Y, Kuno H, Santou T, Kanzaki N, Terauchi J, Uchikawa O, Kori M, J Med Chem. 2017 Jan 9. doi: 10.1021/acs.jmedchem.6b01007. PMID:27966948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (5b5o.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (5b5o.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5B5O
  • CSU: Contacts of Structural Units for 5B5O
  • Structure Factors (1488 Kb)
  • Retrieve 5B5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B5O from S2C, [Save to disk]
  • Re-refined 5b5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b5o] [5b5o_A] [5b5o_B]
  • SWISS-PROT database:

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