5B6N Oxidoreductase date May 30, 2016
title Crystal Structures Of Human Peroxiredoxin 6 In Sulfinic Acid
authors K.H.Kim, W.T.Lee, E.E.Kim
compound source
Molecule: Peroxiredoxin-6
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdx6, Aop2, Kiaa0106
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 21 21 21
R_factor 0.248 R_Free 0.304
length a length b length c angle alpha angle beta angle gamma
94.419 106.539 167.915 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand CSD enzyme Oxidoreductase E.C. BRENDA
F, A, D, C, E, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (5b6n.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (5b6n.pdb2.gz) 65 Kb
  • Biological Unit Coordinates (5b6n.pdb3.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 5B6N
  • CSU: Contacts of Structural Units for 5B6N
  • Structure Factors (947 Kb)
  • Retrieve 5B6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B6N from S2C, [Save to disk]
  • Re-refined 5b6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B6N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5b6n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b6n] [5b6n_A] [5b6n_E] [5b6n_F] [5b6n_D] [5b6n_C] [5b6n_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5B6N
  • Community annotation for 5B6N at PDBWiki (http://pdbwiki.org)

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