5B79 Metal Binding Protein date Jun 05, 2016
title Crystal Structure Of Dpf2 Double Phd Finger
authors H.Li, X.Xiong
compound source
Molecule: Zinc Finger Protein Ubi-D4
Chain: A
Fragment: Unp Residues 270-391
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpf2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.189 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.979 106.979 52.592 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (5b79.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5B79
  • CSU: Contacts of Structural Units for 5B79
  • Structure Factors (92 Kb)
  • Retrieve 5B79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B79 from S2C, [Save to disk]
  • Re-refined 5b79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B79
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5b79 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b79] [5b79_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5B79: [PHD] [RING ] by SMART
  • Other resources with information on 5B79
  • Community annotation for 5B79 at PDBWiki (http://pdbwiki.org)

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