5B83 Signaling Protein date Jun 12, 2016
title Crystal Structure Of Optineurin Uban In Complex With Linear
authors R.Ishii, O.Nureki
compound source
Molecule: Tetra Ubiquitin
Chain: A, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid

Molecule: Optineurin
Chain: B, C, E, F
Fragment: Unp Residues 416-510
Synonym: E3-14.7k-Interacting Protein,Fip-2,Huntingtin Yeas L,Huntingtin-Interacting Protein 7,Hip-7,Huntingtin-Interac Protein L,Nemo-Related Protein,Optic Neuropathy-Inducing Pr Transcription Factor Iiia-Interacting Protein,Tfiiia-Intp;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Optn, Fip2, Glc1e, Hip7, Hypl, Nrp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.327 82.038 244.853 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
Gene
Ontology
ChainFunctionProcessComponent
F, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (5b83.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (5b83.pdb2.gz) 141 Kb
  • CSU: Contacts of Structural Units for 5B83
  • Structure Factors (364 Kb)
  • Retrieve 5B83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B83 from S2C, [Save to disk]
  • Re-refined 5b83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B83
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5b83 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b83_B] [5b83] [5b83_A] [5b83_E] [5b83_D] [5b83_F] [5b83_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5B83: [UBQ ] by SMART
  • Other resources with information on 5B83
  • Community annotation for 5B83 at PDBWiki (http://pdbwiki.org)

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