5B8C	Immune System	date	Jun 14, 2016
title	High Resolution Structure Of The Human Pd-1 In Complex With Pembrolizumab Fv
authors	S.Horita, T.Shimamura, S.Iwata, N.Nomura
compound		source
Molecule: Pembrolizumab Light Chain Variable Region (Pemvl) Chain: A, D, G, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Brevibacillus Choshinensis Expression_system_taxid: 54911
Molecule: Pembrolizumab Heavy Chain Variable Region (Pemvh) Chain: B, E, H, K Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Brevibacillus Choshinensis Expression_system_taxid: 54911
Molecule: Programmed Cell Death Protein 1 Chain: C, F, I, L Synonym: Hpd-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdcd1, Pd1 Expression_system: Brevibacillus Choshinensis Expression_system_taxid: 54911
symmetry	Space Group: P 21 21 21	R_factor 0.184 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.680 143.130 76.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
Gene Ontology	Chain Function Process Component F, C, I, L
Primary reference	High-resolution crystal structure of the therapeutic antibody pembrolizumab bound to the human PD-1., Horita S, Nomura Y, Sato Y, Shimamura T, Iwata S, Nomura N, Sci Rep. 2016 Oct 13;6:35297. doi: 10.1038/srep35297. PMID:27734966

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk] Biological Unit Coordinates (5b8c.pdb1.gz) 114 Kb Biological Unit Coordinates (5b8c.pdb2.gz) 112 Kb Biological Unit Coordinates (5b8c.pdb3.gz) 112 Kb Biological Unit Coordinates (5b8c.pdb4.gz) 114 Kb CSU: Contacts of Structural Units for 5B8C Structure Factors (1452 Kb) Retrieve 5B8C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5B8C from S2C, [Save to disk] Re-refined 5b8c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5B8C

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b8c_K] [5b8c_B] [5b8c_A] [5b8c_G] [5b8c_F] [5b8c_L] [5b8c_I] [5b8c_J] [5b8c_C] [5b8c_E] [5b8c_H] [5b8c_D] [5b8c] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5B8C: [IGv ] by SMART

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