5BNB	Cell Cycle	date	May 25, 2015
title	Crystal Structure Of A Ube2s-Ubiquitin Conjugate
authors	S.G.Lorenz, C.G.Feiler, J.Kuriyan
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 S Chain: A, B, C, D Synonym: E2-Epf,Ubiquitin Carrier Protein S,Ubiquitin-Conju Enzyme E2-24 Kda,Ubiquitin-Conjugating Enzyme E2-Epf5,Ubiqu Protein Ligase S; Ec: 6.3.2.19 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2s, E2epf, Oksw-Cl.73 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Psmt3
Molecule: Polyubiquitin-B Chain: E, F, G, I Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
symmetry	Space Group: P 1 21 1	R_factor 0.243 R_Free 0.304
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.906 45.854 110.576 90.00 93.14 90.00
method	X-Ray Diffraction	resolution	2.49 Å
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
Primary reference	Crystal Structure of a Ube2S-Ubiquitin Conjugate., Lorenz S, Bhattacharyya M, Feiler C, Rape M, Kuriyan J, PLoS One. 2016 Feb 1;11(2):e0147550. doi: 10.1371/journal.pone.0147550., eCollection 2016. PMID:26828794

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (373 Kb) [Save to disk] Biological Unit Coordinates (5bnb.pdb1.gz) 96 Kb Biological Unit Coordinates (5bnb.pdb2.gz) 97 Kb Biological Unit Coordinates (5bnb.pdb3.gz) 104 Kb Biological Unit Coordinates (5bnb.pdb4.gz) 78 Kb CSU: Contacts of Structural Units for 5BNB Structure Factors (1720 Kb) Retrieve 5BNB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BNB from S2C, [Save to disk] Re-refined 5bnb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BNB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BNB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bnb_G] [5bnb_D] [5bnb_C] [5bnb_F] [5bnb_I] [5bnb_A] [5bnb_E] [5bnb_B] [5bnb] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5BNB: [UBCc] [UBQ ] by SMART

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