5BNG Protein Dna date May 26, 2015
title Monomer Of Tale Type Homeobox Transcription Factor Meis1 Com With Specific Dna
authors E.Morgunova, A.Jolma, Y.Yin, K.Nitta, K.Dave, A.Popov, M.Taipale, M T.Kivioja, J.Taipale
compound source
Molecule: Homeobox Protein Meis2
Chain: B, A
Fragment: Residues 283-342
Synonym: Meis1-Related Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Meis2, Mrg1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petg20a

Molecule: Dna (5'-D(Ptptpapgpcptpgptpcpa)-3')
Chain: L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Ptpgpapcpapgpcptpapa-3')
Chain: M
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Papaptptpapgpcptpgptpcpa)-3
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Ptpgpapcpapgpcptpapa)-3')
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.343 R_Free 0.388
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.900 59.940 107.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDNA-dependent formation of transcription factor pairs alters their binding specificity., Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J, Nature. 2015 Nov 19;527(7578):384-8. doi: 10.1038/nature15518. Epub 2015 Nov 9. PMID:26550823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (5bng.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (5bng.pdb2.gz) 20 Kb
  • CSU: Contacts of Structural Units for 5BNG
  • Structure Factors (556 Kb)
  • Retrieve 5BNG in mmCIF format [Save to disk]
  • Re-refined 5bng structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BNG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BNG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5bng from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bng_A] [5bng_D] [5bng_B] [5bng_M] [5bng] [5bng_C] [5bng_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BNG: [HOX ] by SMART
  • Other resources with information on 5BNG
  • Community annotation for 5BNG at PDBWiki (http://pdbwiki.org)

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