5BO4 Signaling Protein date May 27, 2015
title Structure Of Socs2:Elongin C:Elongin B From Dmso-Treated Cry
authors M.S.Gadd, E.Bulatov, A.Ciulli
compound source
Molecule: Suppressor Of Cytokine Signaling 2
Chain: A, D, G, J, M, P
Synonym: Socs-2,Cytokine-Inducible Sh2 Protein 2,Cis-2,Stat Stat Inhibitor 2,Ssi-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Socs2, Cis2, Ssi2, Stati2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plic

Molecule: Transcription Elongation Factor B Polypeptide 2
Chain: B, E, H, K, N, Q
Synonym: Elongin 18 Kda Subunit,Elongin-B,Elob,Rna Polymera Transcription Factor Siii Subunit B,Siii P18;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tceb2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdfduet-1

Molecule: Transcription Elongation Factor B Polypeptide 1
Chain: C, F, I, L, O, R
Synonym: Elongin 15 Kda Subunit,Elongin-C,Eloc,Rna Polymera Transcription Factor Siii Subunit C,Siii P15;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tceb1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdfduet-1
symmetry Space Group: P 32
R_factor 0.229 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.217 185.217 67.204 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand CAS enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, C, L, O, R, I


M, A, J, P, D, G


N, K, E, Q, B, H


Primary referenceSerendipitous SAD Solution for DMSO-Soaked SOCS2-ElonginC-ElonginB Crystals Using Covalently Incorporated Dimethylarsenic: Insights into Substrate Receptor Conformational Flexibility in Cullin RING Ligases., Gadd MS, Bulatov E, Ciulli A, PLoS One. 2015 Jun 29;10(6):e0131218. doi: 10.1371/journal.pone.0131218., eCollection 2015. PMID:26121586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (648 Kb) [Save to disk]
  • Biological Unit Coordinates (5bo4.pdb1.gz) 113 Kb
  • Biological Unit Coordinates (5bo4.pdb2.gz) 110 Kb
  • Biological Unit Coordinates (5bo4.pdb3.gz) 115 Kb
  • Biological Unit Coordinates (5bo4.pdb4.gz) 115 Kb
  • Biological Unit Coordinates (5bo4.pdb5.gz) 100 Kb
  • Biological Unit Coordinates (5bo4.pdb6.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 5BO4
  • CSU: Contacts of Structural Units for 5BO4
  • Structure Factors (3126 Kb)
  • Retrieve 5BO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BO4 from S2C, [Save to disk]
  • Re-refined 5bo4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BO4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5bo4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bo4_A] [5bo4_P] [5bo4_L] [5bo4_E] [5bo4_I] [5bo4_K] [5bo4_D] [5bo4_C] [5bo4_H] [5bo4_O] [5bo4_N] [5bo4_R] [5bo4_B] [5bo4_G] [5bo4_M] [5bo4_J] [5bo4_F] [5bo4_Q] [5bo4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5BO4: [SH2] [SOCS] [SOCS_box] [Skp1] [UBQ ] by SMART
  • Other resources with information on 5BO4
  • Community annotation for 5BO4 at PDBWiki (http://pdbwiki.org)

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