5BOU Hydrolase Hydrolase Inhibitor date May 27, 2015
title Yeast 20s Proteasome In Complex With A Beta1 Beta2 Specifi Peptidic Sulfonamide Ligand
authors P.Beck, M.Groll
compound source
Molecule: Proteasome Subunit Alpha Type-2
Chain: A, O
Synonym: Macropain Subunit Y7,Multicatalytic Endopeptidase Subunit Y7,Proteasome Component Y7,Proteinase Ysce Subunit
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Alpha Type-3
Chain: B, P
Synonym: Macropain Subunit Y13,Multicatalytic Endopeptidase Subunit Y13,Proteasome Component Y13,Proteinase Ysce Subuni
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Alpha Type-4
Chain: C, Q
Synonym: Macropain Subunit Pre6,Multicatalytic Endopeptidas Subunit Pre6,Proteasome Component Pre6,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Alpha Type-5
Chain: D, R
Synonym: Macropain Subunit Pup2,Multicatalytic Endopeptidas Subunit Pup2,Proteasome Component Pup2,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Alpha Type-6
Chain: E, S
Synonym: Macropain Subunit Pre5,Multicatalytic Endopeptidas Subunit Pre5,Proteasome Component Pre5,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Probable Proteasome Subunit Alpha Type-7
Chain: F, T
Synonym: Macropain Subunit C1,Multicatalytic Endopeptidase Subunit C1,Proteasome Component C1,Proteinase Ysce Subunit
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Alpha Type-1
Chain: G, U
Synonym: Macropain Subunit C7-Alpha,Multicatalytic Endopept Complex C7,Proteasome Component C7-Alpha,Proteasome Compone Proteinase Ysce Subunit 7,Scl1 Suppressor Protein;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-2
Chain: H, V
Synonym: Macropain Subunit Pup1,Multicatalytic Endopeptidas Subunit Pup1,Proteasome Component Pup1,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-3
Chain: I, W
Synonym: Macropain Subunit Pup3,Multicatalytic Endopeptidas Subunit Pup3,Proteasome Component Pup3;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-4
Chain: J, X
Synonym: Macropain Subunit C11,Multicatalytic Endopeptidase Subunit C11,Proteasome Component C11,Proteinase Ysce Subuni
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-5
Chain: K, Y
Synonym: Macropain Subunit Pre2,Multicatalytic Endopeptidas Subunit Pre2,Proteasome Component Pre2,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-6
Chain: L, Z
Synonym: Multicatalytic Endopeptidase Complex Subunit C5,Pr Component C5;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-7
Chain: M, a
Synonym: Macropain Subunit Pre4,Multicatalytic Endopeptidas Subunit Pre4,Proteasome Component Pre4,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292

Molecule: Proteasome Subunit Beta Type-1
Chain: N, b
Synonym: Macropain Subunit Pre3,Multicatalytic Endopeptidas Subunit Pre3,Proteasome Component Pre3,Proteinase Ysce Subu
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae S288c
Organism_common: Baker'S Yeast
Organism_taxid: 559292
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.840 301.000 146.300 90.00 113.27 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 4UC, CL, MG enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A

  • proteasome core complex, alp...
  • B

  • proteasome core complex, alp...
  • D, R

  • proteasome core complex, alp...
  • F, T

  • proteasome core complex, alp...
  • G, U

  • proteasome core complex, alp...
  • J, X
  • endopeptidase activator acti...

  • proteasome core complex, bet...
  • K, Y, V, H


    M

  • proteasome core complex, bet...
  • N

  • proteasome core complex, bet...
  • O

  • proteasome core complex, alp...
  • P

  • proteasome core complex, alp...
  • Q, C


    S, E

  • proteasome core complex, alp...
  • W, I
  • endopeptidase activator acti...

  • proteasome core complex, bet...
  • Z, L

  • proteasome core complex, bet...
  • a

  • proteasome core complex, bet...
  • b

  • proteasome core complex, bet...
  • Primary referenceIdentification of a beta1/beta2-Specific Sulfonamide Proteasome Ligand by Crystallographic Screening., Beck P, Reboud-Ravaux M, Groll M, Angew Chem Int Ed Engl. 2015 Aug 4. doi: 10.1002/anie.201505054. PMID:26242779
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2091 Kb) [Save to disk]
  • Biological Unit Coordinates (5bou.pdb1.gz) 2076 Kb
  • LPC: Ligand-Protein Contacts for 5BOU
  • CSU: Contacts of Structural Units for 5BOU
  • Structure Factors (5795 Kb)
  • Retrieve 5BOU in mmCIF format [Save to disk]
  • Re-refined 5bou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BOU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5bou from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bou_E] [5bou_P] [5bou_K] [5bou_W] [5bou_J] [5bou_V] [5bou_a] [5bou_A] [5bou_Z] [5bou_H] [5bou_b] [5bou_I] [5bou_Y] [5bou_G] [5bou_L] [5bou_S] [5bou_D] [5bou_B] [5bou_X] [5bou_N] [5bou_Q] [5bou_R] [5bou_F] [5bou_C] [5bou] [5bou_U] [5bou_M] [5bou_O] [5bou_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BOU: [Proteasome_A_N ] by SMART
  • Other resources with information on 5BOU
  • Community annotation for 5BOU at PDBWiki (http://pdbwiki.org)

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