5BRH Transferase Transferase Inhibitor date May 30, 2015
title Crystal Structure Of Trypanosoma Cruzi Glucokinase In Comple Inhibitor Dbt-Glcn
authors E.L.D'Antonio, K.Perry, M.S.Deinema, S.P.Kearns, T.A.Frey
compound source
Molecule: Glucokinase 1, Putative
Chain: A, B
Fragment: Trypanosoma Cruzi Glucokinase
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Trypanosoma Cruzi (Strain Cl Brener)
Organism_taxid: 353153
Strain: Cl Brener
Gene: Tc00.1047053510187.100
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a(+)
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.245 78.744 75.389 90.00 94.80 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 4V3 enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase., D'Antonio EL, Deinema MS, Kearns SP, Frey TA, Tanghe S, Perry K, Roy TA, Gracz HS, Rodriguez A, D'Antonio J, Mol Biochem Parasitol. 2016 Jan 14;204(2):64-76. doi:, 10.1016/j.molbiopara.2015.12.004. PMID:26778112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (5brh.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5BRH
  • CSU: Contacts of Structural Units for 5BRH
  • Structure Factors (626 Kb)
  • Retrieve 5BRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BRH from S2C, [Save to disk]
  • Re-refined 5brh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BRH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5BRH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5brh_A] [5brh_B] [5brh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BRH
  • Community annotation for 5BRH at PDBWiki (http://pdbwiki.org)

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