5BRZ Immune System date Jun 01, 2015
title Mage-A3 Reactive Tcr In Complex With Mage-A3 In Hla-A1
authors M.C.C.Raman, P.J.Rizkallah, R.Simmons, Z.Donnellan, J.Dukes, G.Bo G.Leprovost, T.Mahon, E.Hickman, M.Lomax, J.Oates, N.Hassan, A.Vu M.Sami, D.K.Cole, B.K.Jakobsen
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-1 Alpha
Chain: A
Synonym: Mhc Class I Antigen A1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glu-Val-Asp-Pro-Ile-Gly-His-Leu-Tyr
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Protein Trav21,T-Cell Receptor Alpha Chain C Regi
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trav21, Trac, Tcra
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Trbv5-1,Human Nkt Tcr Beta Chain
Chain: E
Synonym: V_segment Translation Product
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tcrbv5s1a1t, Trbv5-1, B2m, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.590 47.500 119.250 90.00 109.12 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • D


    Primary referenceDirect molecular mimicry enables off-target cardiovascular toxicity by an enhanced affinity TCR designed for cancer immunotherapy., Raman MC, Rizkallah PJ, Simmons R, Donnellan Z, Dukes J, Bossi G, Le Provost GS, Todorov P, Baston E, Hickman E, Mahon T, Hassan N, Vuidepot A, Sami M, Cole DK, Jakobsen BK, Sci Rep. 2016 Jan 13;6:18851. doi: 10.1038/srep18851. PMID:26758806
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (5brz.pdb1.gz) 282 Kb
  • LPC: Ligand-Protein Contacts for 5BRZ
  • CSU: Contacts of Structural Units for 5BRZ
  • Structure Factors (1477 Kb)
  • Retrieve 5BRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BRZ from S2C, [Save to disk]
  • Re-refined 5brz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BRZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5brz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5brz_C] [5brz] [5brz_A] [5brz_E] [5brz_B] [5brz_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5BRZ: [IG_like] [IGc1] [IGv ] by SMART
  • Other resources with information on 5BRZ
  • Community annotation for 5BRZ at PDBWiki (http://pdbwiki.org)

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