5BSC Isomerase date Jun 01, 2015
title Crystal Structure Of K66a Mutant Of Human Macrophage Migrati Inhibitory Factor
authors G.Pantouris, E.Lolis
compound source
Molecule: Macrophage Migration Inhibitory Factor
Chain: A, B, C
Synonym: Mif, Glycosylation-Inhibiting Factor, Gif, L-Dopac Isomerase, L-Dopachrome Tautomerase, Phenylpyruvate Tautome
Ec: 5.3.2.1, 5.3.3.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mif, Glif, Mmif
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.275 67.771 87.535 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand IPA enzyme Isomerase E.C.5.3.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • chemoattractant activity


  • Primary referenceAn Analysis of MIF Structural Features that Control Functional Activation of CD74., Pantouris G, Syed MA, Fan C, Rajasekaran D, Cho TY, Rosenberg EM Jr, Bucala R, Bhandari V, Lolis EJ, Chem Biol. 2015 Sep 17;22(9):1197-205. doi: 10.1016/j.chembiol.2015.08.006. Epub , 2015 Sep 10. PMID:26364929
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5bsc.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5BSC
  • CSU: Contacts of Structural Units for 5BSC
  • Structure Factors (594 Kb)
  • Retrieve 5BSC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BSC from S2C, [Save to disk]
  • Re-refined 5bsc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BSC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BSC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bsc_B] [5bsc] [5bsc_C] [5bsc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BSC
  • Community annotation for 5BSC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science