5BT2	Dna Binding Protein Dna	date	Jun 02, 2015
title	Mecp2 Mbd Domain (A140v) In Complex With Methylated Dna
authors	K.L.Ho, J.Y.Chia, W.S.Tan, C.L.Ng, N.J.Hu, H.L.Foo
compound		source
Molecule: Methyl-Cpg-Binding Protein 2 Chain: A Fragment: Mbd Domain, Unp Residues 77-167 Synonym: Mecp2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mecp2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plys Expression_system_plasmid: Pet30b
Molecule: Dna (5'-D(Tpcptpgpgpapap(5cm) Pgpgpapaptptpcptptpcptpa)-3'); Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'-D(Aptpapgpapapgpapaptptpcp(5 Pgptptpcpcpapg)-3'); Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.175 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.660 53.490 65.780 90.00 132.47 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	5CM	enzyme
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (5bt2.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 5BT2 CSU: Contacts of Structural Units for 5BT2 Structure Factors (194 Kb) Retrieve 5BT2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5BT2 from S2C, [Save to disk] Re-refined 5bt2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BT2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5BT2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bt2_A] [5bt2_B] [5bt2] [5bt2_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5BT2: [MBD ] by SMART

Other resources with information on 5BT2

Community annotation for 5BT2 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---