5BT2 Dna Binding Protein Dna date Jun 02, 2015
title Mecp2 Mbd Domain (A140v) In Complex With Methylated Dna
authors K.L.Ho, J.Y.Chia, W.S.Tan, C.L.Ng, N.J.Hu, H.L.Foo
compound source
Molecule: Methyl-Cpg-Binding Protein 2
Chain: A
Fragment: Mbd Domain, Unp Residues 77-167
Synonym: Mecp2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mecp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plys
Expression_system_plasmid: Pet30b

Molecule: Dna (5'-D(Tpcptpgpgpapap(5cm) Pgpgpapaptptpcptptpcptpa)-3');
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Aptpapgpapapgpapaptptpcp(5 Pgptptpcpcpapg)-3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.175 R_Free 0.227
length a length b length c angle alpha angle beta angle gamma
78.660 53.490 65.780 90.00 132.47 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 5CM enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5bt2.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5BT2
  • CSU: Contacts of Structural Units for 5BT2
  • Structure Factors (194 Kb)
  • Retrieve 5BT2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BT2 from S2C, [Save to disk]
  • Re-refined 5bt2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BT2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BT2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5bt2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bt2_A] [5bt2_B] [5bt2] [5bt2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BT2: [MBD ] by SMART
  • Other resources with information on 5BT2
  • Community annotation for 5BT2 at PDBWiki (http://pdbwiki.org)

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