5BV6 Transferase date Jun 04, 2015
title Pkg II'S Carboxyl Terminal Cyclic Nucleotide Binding Domain A Complex With Cgmp
authors J.C.Campbell, A.S.Reger, G.Y.Huang, B.Sankaran, J.J.Kim, C.W.Kim
compound source
Molecule: Cgmp-Dependent Protein Kinase 2
Chain: A
Fragment: Unp Residues 269-418
Synonym: Cgk2,Cgmp-Dependent Protein Kinase II,Cgkii
Ec: 2.7.11.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkg2, Prkgr2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.344 50.479 69.167 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand 35G, ACT, CA, NA enzyme Transferase E.C.2.7.11.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of Cyclic Nucleotide Selectivity in cGMP-Dependent Protein Kinase II., Campbell JC, Kim JJ, Li KY, Huang GY, Reger AS, Matsuda S, Sankaran B, Link TM, Yuasa K, Ladbury JE, Casteel DE, Kim C, J Biol Chem. 2016 Jan 14. pii: jbc.M115.691303. PMID:26769964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5bv6.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5BV6
  • CSU: Contacts of Structural Units for 5BV6
  • Structure Factors (84 Kb)
  • Retrieve 5BV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BV6 from S2C, [Save to disk]
  • Re-refined 5bv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BV6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bv6] [5bv6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5BV6: [cNMP ] by SMART
  • Other resources with information on 5BV6
  • Community annotation for 5BV6 at PDBWiki (http://pdbwiki.org)

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