OCA Atlas for 5BVB

5BVB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DOG

enzyme

Primary reference

CSAR Benchmark Exercise 2013: Evaluation of Results from a Combined Computational Protein Design, Docking, and Scoring/Ranking Challenge., Smith RD, Damm-Ganamet KL, Dunbar JB Jr, Ahmed A, Chinnaswamy K, Delproposto JE, Kubish GM, Tinberg CE, Khare SD, Dou J, Doyle L, Stuckey JA, Baker D, Carlson HA, J Chem Inf Model. 2016 Jun 27;56(6):1022-31. doi: 10.1021/acs.jcim.5b00387. Epub , 2015 Oct 9. PMID:26419257

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]

Biological Unit Coordinates (5bvb.pdb1.gz) 40 Kb

Biological Unit Coordinates (5bvb.pdb2.gz) 40 Kb

Biological Unit Coordinates (5bvb.pdb3.gz) 39 Kb

Biological Unit Coordinates (5bvb.pdb4.gz) 36 Kb

Biological Unit Coordinates (5bvb.pdb5.gz) 77 Kb

Biological Unit Coordinates (5bvb.pdb6.gz) 73 Kb

LPC: Ligand-Protein Contacts for 5BVB

CSU: Contacts of Structural Units for 5BVB

Structure Factors (617 Kb)

Retrieve 5BVB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5BVB from S2C, [Save to disk]

Re-refined 5bvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5BVB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5bvb] [5bvb_A] [5bvb_B] [5bvb_C] [5bvb_D]

SWISS-PROT database:

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