5BW7 Immune System date Jun 06, 2015
title Crystal Structure Of Nonfucosylated Fc Y296w Mutant Complexe Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
authors Y.Isoda, H.Yagi, T.Satoh, M.Shibata-Koyama, K.Masuda, M.Satoh, K.K S.Iida
compound source
Molecule: Ig Gamma-1 Chain C Region
Chain: A, B
Fragment: Unp Residues 108-330
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ighg1
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_strain: Ms704
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkantex2160

Molecule: Low Affinity Immunoglobulin Gamma Fc Region Recep
Chain: C
Fragment: Unp Residues 21-193
Synonym: Cd16a Antigen,Fc-Gamma Riii-Alpha,Fcriiia,Fcr-10,I Receptor III-2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fcgr3a, Cd16a, Fcg3, Fcgr3, Igfr3
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkantex93
symmetry Space Group: P 41 21 2
R_factor 0.204 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.273 77.273 350.983 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BMA, CL, FUC, GAL, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (5bw7.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (5bw7.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5BW7
  • CSU: Contacts of Structural Units for 5BW7
  • Structure Factors (409 Kb)
  • Retrieve 5BW7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BW7 from S2C, [Save to disk]
  • Re-refined 5bw7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5BW7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BW7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bw7_C] [5bw7_B] [5bw7] [5bw7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5BW7: [IG] [IG_like] [IGc1 ] by SMART
    • Other resources with information on 5BW7
  • Community annotation for 5BW7 at PDBWiki (http://pdbwiki.org)

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