5BWA Lyase Lyase Inhibitor date Jun 07, 2015
title Crystal Structure Of Odc-Plp-Az1 Ternary Complex
authors D.H.Wu
compound source
Molecule: Ornithine Decarboxylase
Chain: A
Synonym: Odc
Ec: 4.1.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Odc1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1

Molecule: Ornithine Decarboxylase Antizyme 1
Chain: B
Fragment: Unp Residues 69-228
Synonym: Odc-Az
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Oaz1, Oaz
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.154 74.084 157.083 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand PLP enzyme Lyase E.C.4.1.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of Ornithine Decarboxylase inactivation and accelerated degradation by polyamine sensor Antizyme1., Wu D, Kaan HY, Zheng X, Tang X, He Y, Vanessa Tan Q, Zhang N, Song H, Sci Rep. 2015 Oct 7;5:14738. doi: 10.1038/srep14738. PMID:26443277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (5bwa.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 5BWA
  • CSU: Contacts of Structural Units for 5BWA
  • Structure Factors (154 Kb)
  • Retrieve 5BWA in mmCIF format [Save to disk]
  • Re-refined 5bwa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5BWA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5BWA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5bwa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bwa_B] [5bwa] [5bwa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5BWA
  • Community annotation for 5BWA at PDBWiki (http://pdbwiki.org)

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